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Nominations for the Benjamin Franklin Award for Open Access in the Life Sciences

Earlier this week I recieved an email with the annual call for nominations for the Benjamin Franklin Award for Open Access in the Life Sciences. While I am in general not that fussed about the...

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Where Do Bioinformaticians Host Their Code?

Awhile back I was piqued by a discussion on BioStar about “Where would you host your open source code repository today?“, which got me thinking about the relative merits of the different sites for...

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Top N Reasons To Do A Ph.D. or Post-Doc in Bioinformatics/Computational Biology

For the last few years I’ve given a talk to incoming Ph.D. students in Molecular Biology on why they should consider doing Computational Biology research. I’m fairly passionate about making this pitch,...

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On the Preservation of Published Bioinformatics Code on Github

A few months back I posted a quick analysis of trends in where bioinformaticians choose to host their source code. A clear trend emerging in the bioinformatics community is to use github as the primary...

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Launch of the PLOS Text Mining Collection

Just a quick post to announce that the PLOS Text Mining Collection is now live! This PLOS Collection arose out of a twitter conversation with Theo Bloom last year, and has come together through the...

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Incentivising open data & reproducible research through pre-publication...

Yesterday Ewan Birney posted a series of tweets expressing surprise that more people don’t take advantage of ENA’s programmatic access to submit and store next-generation sequencing (NGS) data to EBI,...

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